WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110402 Phenotype Remark  Knockdown of spg-7 by RNAi triggers the UPRmt response in C. elegans, by strong induction of the mitochondrial chaperone hsp-6 and of the proteases lonp-1 and clpp-1 as well as a reduction in ubl-5.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.10 Y47G6A.10 2349   I: 3467134-3467253

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0000717 gene expression variant Variations in the processes that convert a gene's sequence into a mature gene product or products (proteins or RNA), compared to control.
WBPhenotype:0001719 unfolded protein response variant Animals exhibit variations in any of the series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) and or the mitochondria, compared to control. One such response is the increase in expression of chaperones.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00045732

1 Strain

WormBase ID
WBStrain00000001