WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00098870 Phenotype Remark  dsh-1, dsh-2, mig-5 triple RNAi resulted in a substantial embryo gastrulation defect (more so than individual RNAi treatments).
Remark  (Figure 2A, S2) dsh-1, dsh-2, mig-5 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001101 dsh-1 C34F11.9 Caenorhabditis elegans
WBGene00001102 dsh-2 C27A2.6 Caenorhabditis elegans
WBGene00003241 mig-5 T05C12.6 Caenorhabditis elegans

10 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.9e C34F11.9e 2946   II: 5214523-5214649
CDS:C34F11.9d C34F11.9d 1521   II: 5214523-5214649
CDS:C34F11.9a C34F11.9a 1911   II: 5215623-5215831
CDS:C34F11.9b C34F11.9b 2748   II: 5215623-5215831
CDS:C34F11.9f C34F11.9f 1323   II: 5215623-5215831
CDS:T05C12.6c T05C12.6c 1878   II: 8182509-8182639
CDS:C27A2.6 C27A2.6 2280   II: 5078429-5078567
CDS:C34F11.9c C34F11.9c 2109   II: 5214523-5214649
CDS:T05C12.6a T05C12.6a 2019   II: 8182478-8182626
CDS:T05C12.6b T05C12.6b 2001   II: 8182509-8182639

1 Laboratories

Primary Identifier
LP

1 Phenotype

Identifier Name Description
WBPhenotype:0000047 gastrulation variant Variations in the process by which the germ layers become positioned in an embryo compared to control animals. Gastrulation involves the proper ingression of small groups of cells at various times into the blastocoel space.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028736

0 Strain