WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00063745 Genotype  gmIs12 [srb-6::gfp]
Remark  the probe used for dsh-2 RNAi experiments was inadvertently published as yk135c11 instead of yk134c11 which was used for experiments

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001101 dsh-1 C34F11.9 Caenorhabditis elegans
WBGene00001102 dsh-2 C27A2.6 Caenorhabditis elegans
WBGene00003241 mig-5 T05C12.6 Caenorhabditis elegans

10 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.9e C34F11.9e 2946   II: 5214523-5214649
CDS:C34F11.9d C34F11.9d 1521   II: 5214523-5214649
CDS:C34F11.9a C34F11.9a 1911   II: 5215623-5215831
CDS:C34F11.9b C34F11.9b 2748   II: 5215623-5215831
CDS:C34F11.9f C34F11.9f 1323   II: 5215623-5215831
CDS:T05C12.6c T05C12.6c 1878   II: 8182509-8182639
CDS:C27A2.6 C27A2.6 2280   II: 5078429-5078567
CDS:C34F11.9c C34F11.9c 2109   II: 5214523-5214649
CDS:T05C12.6a T05C12.6a 2019   II: 8182478-8182626
CDS:T05C12.6b T05C12.6b 2001   II: 8182509-8182639

1 Laboratories

Primary Identifier
NG

1 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00026633

0 Strain