WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00079055 Phenotype Remark  Loss of ceh-22::GFP expression (pharyngeal marker)
Remark  Exact sequence used for glp-1 and wrm-1 RNAi not stated by authors, Ahringer laboratory clone used for curation. Exact sequence used for med-1/2 RNAi not stated by authors, spliced coding region sequence of med-1 gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

4 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001609 glp-1 F02A9.6 Caenorhabditis elegans
WBGene00003180 med-1 T24D3.1 Caenorhabditis elegans
WBGene00003181 med-2 K04C2.6 Caenorhabditis elegans
WBGene00006943 wrm-1 B0336.1 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0336.1a B0336.1a 2391   III: 5722883-5722907
CDS:B0336.1b B0336.1b 2229   III: 5723639-5723782
CDS:K04C2.6 K04C2.6 525   III: 6884503-6885027
CDS:F02A9.6 F02A9.6 3888   III: 9092313-9092452
CDS:T24D3.1 T24D3.1 525   X: 12430609-12431133

1 Laboratories

Primary Identifier
JR

3 Phenotype

Identifier Name Description
WBPhenotype:0001375 transgene expression undetectable The expression of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism is reduced below the threshold of detection.
WBPhenotype:0001646 no pharynx Embryos fail to generate cells that exhibit pharyngeal specification.
WBPhenotype:0001637 no Intestine Embryos fail to generate cells that exhibit intestinal specification. In C. elegans, the E blastomere is the precursor of all the intestinal cells.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004636

0 Strain