WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064533 Remark  Genetic enhancer interactions are identified by comparing RNAi phenotypes of library genes in wild-type animals with those seen in mutant worms carrying a defined lesion in a single query gene; a genetic interaction between a query gene and a library gene is observed if the phenotype of the combined perturbation is greater than the sum of the two individual perturbations.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003639 nhr-49 K10C3.6 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10C3.6c K10C3.6c 1506   I: 9869718-9869787
CDS:K10C3.6b K10C3.6b 1431   I: 9871230-9871325
CDS:K10C3.6a K10C3.6a 1434   I: 9871230-9871325
CDS:K10C3.6d K10C3.6d 1461   I: 9869767-9869791
CDS:K10C3.6e K10C3.6e 1065   I: 9872822-9873046

1 Laboratories

Primary Identifier
ANF

1 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027756

1 Strain

WormBase ID
WBStrain00022494