WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00089669 Phenotype Remark  pha-4 RNAi resulted in reduced levels of endogenous mRNA for genes bec-1 and pha-4, as determined by RT-PCR. Reduction of pha-4 mRNA confirms RNAi effectiveness.
Remark  (Figure S2F, Figure S3B) pha-4 RNAi. Authors state RNAi clones obtained from the Ahringer and Vidal laboratories, Ahringer clone used for curation. If Ahringer clone not available, Vidal clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004013 pha-4 F38A6.1 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A6.1a F38A6.1a 1521   V: 20753052-20753093
CDS:F38A6.1b F38A6.1b 1329   V: 20755491-20755580
CDS:F38A6.1c F38A6.1c 1236   V: 20756913-20756975

1 Laboratories

Primary Identifier
MAH

1 Phenotype

Identifier Name Description
WBPhenotype:0000137 mRNA levels reduced Animals exhibit decreased levels of messenger RNA compared to control.

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000114 mRNA expression variant Variations in the biogenesis and stability of messenger RNA molecules compared to control.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040180

1 Strain

WormBase ID
WBStrain00000001