WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00085163 Genotype  rde-1(ne219); kbIs7
Phenotype Remark  Animals show significantly decreased survival in the presence of Cry5B (pore forming toxin) compared to controls Remark  Authors note that the rab-11.1 RNAi clone was a gift from Barth Grant. Ahringer clone used for curation. Authors also note that due to the sequence similarity with rab-11.2, this clone likely also knocks down levels of rab-11.2
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004274 rab-11.1 F53G12.1 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G12.1 F53G12.1 636   I: 109265-109446

1 Laboratories

Primary Identifier
HY

1 Phenotype

Identifier Name Description
WBPhenotype:0002059 pore forming toxin hypersensitive Animals respond to pore forming toxins at a lower concentration or a shorter exposure compared to control animals. Increased susceptibility to pore forming toxins (e.g. Cry5B from Bacillus thuringiensis) is often measured by a decrease in the rate of survival in the presence of pore forming toxins compared to controls.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038144

0 Strain