WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00094500 Genotype  dpy-5(e61); rrf-3(ok629)
Phenotype Remark  RNAi resulted in suppression of the dumpy phenotype specifically of the dpy-5(e61) mutation carrying a premature termination codon, but not of the dpy-5(e907) null mutation, indicative of defective mRNA surveillance machinery Remark  (Figure 5N) smg-4 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004882 smg-4 F46B6.3 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46B6.3b F46B6.3b 1107   V: 9776193-9776324
CDS:F46B6.3a F46B6.3a 990   V: 9776303-9776317

1 Laboratories

Primary Identifier
HZ

1 Phenotype

Identifier Name Description
WBPhenotype:0001538 mRNA surveillance defective Defects in the cellular machinery that targets aberrant mRNAs species (nonsense codons, splice errors, altered untranslated regions etc.) for degradation. In C. elegans, mutations in such loci often act as allele-specific non gene-specific recessive suppressors of certain allele phenotypes and cause abnormal morphogenesis of male and hermaphrodite genitalia.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040559

0 Strain