WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092396 Phenotype Remark  RNAi of the asd-2 gene resulted in ectopic expression of UNC-60A in body wall muscles, as determined by antibody staining of endogenous UNC-60A, implicating ASD-2 in splicing of the unc-60 transcript.
Remark  (Figure 5B) asd-2 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006423 asd-2 T21G5.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21G5.5a T21G5.5a 987   I: 6879770-6880041
CDS:T21G5.5b T21G5.5b 1212   I: 6878976-6879204
CDS:T21G5.5c T21G5.5c 1338   I: 6878976-6879204
CDS:T21G5.5d T21G5.5d 1461   I: 6877740-6877801

1 Laboratories

Primary Identifier
KH

2 Phenotype

Identifier Name Description
WBPhenotype:0001404 ectopic expression antibody Any variation that results in the detection of protein expression in cells/tissues through antibody staining, that is otherwise not observed in control animals.
WBPhenotype:0001807 alternative splicing variant Any variation in the process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041641

0 Strain