WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114498 Remark  SJ4005 animals carry the ER chaperone hsp-4 transcriptional reporter, which is a UPRer reporter strain. Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation (Y45F10D.13a.2).

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012891 sorb-1 Y45F10D.13 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10D.13a Y45F10D.13a 3018   IV: 13750336-13750374
CDS:Y45F10D.13d Y45F10D.13d 3024   IV: 13750336-13750374
CDS:Y45F10D.13c Y45F10D.13c 1422   IV: 13764610-13764715
CDS:Y45F10D.13e Y45F10D.13e 1428   IV: 13764610-13764715

0 Laboratories

0 Phenotype

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0001719 unfolded protein response variant Animals exhibit variations in any of the series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) and or the mitochondria, compared to control. One such response is the increase in expression of chaperones.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00057256

1 Strain

WormBase ID
WBStrain00034065