WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110639 Phenotype Remark  RNAi increased the leaving rate per minute. RNAi increased the leaving rate in N2 but not CB4856 (Hawaii) strain.
Remark  In this paper they did RNAi in both N2 (Bristol) and the natural isolate CB4856 (Hawaii or HW), and as expected based on SNP differences, authors saw different results in each background.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018756 plpp-1.1 F53C3.13 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53C3.13f F53C3.13f 1011   II: 3920338-3920386
CDS:F53C3.13b F53C3.13b 1158   II: 3920751-3920952
CDS:F53C3.13a F53C3.13a 1041   II: 3921719-3921803
CDS:F53C3.13c F53C3.13c 1023   II: 3921997-3922063
CDS:F53C3.13d F53C3.13d 1119   II: 3922994-3923156
CDS:F53C3.13e F53C3.13e 1005   II: 3920338-3920386

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001983 lawn leaving behavior variant Variation of the time an individual spent on a patch of food (bacterial lawn) before leaving, compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00048834

1 Strain

WormBase ID
WBStrain00000001