WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097820 Phenotype Remark  RNAi results in increased numbers of germline cell corpses, but a reduced percentage of germline corpses that have been acidified, as determined by acridine orange staining
Remark  (Figure S1, Table S1b) ced-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000415 ced-1 Y47H9C.4 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47H9C.4a Y47H9C.4a 3336   I: 11851953-11852041
CDS:Y47H9C.4b Y47H9C.4b 3213   I: 11851953-11852041
CDS:Y47H9C.4c Y47H9C.4c 3138   I: 11851953-11852041

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0001180 accumulated germline cell corpses Animals exhibit an increase in the quantity of germ line cells that have undergone programmed cell death but have not been engulfed.
WBPhenotype:0001394 cell acidification defective Animals lack the capacity to reduce the internal pH of a cell.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036059

0 Strain