WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110139 Phenotype Remark  In response to spg-7(RNAi): "Specifically, ATFS-1 bound the promoters of nuaf-1 and Y17G9B.5 (ECSIT), two NADH ubiquinone oxidoreductase assembly factors, and lpd-8 (NFU1), a Fe-S cluster biogenesis component (Figures 6A-6C). These genes were induced during mitochondrial stress* in an atfs-1-dependent manner (Figures 6D-6F), suggesting a role for ATFS-1 in OXPHOS complex assembly." *spg-7(RNAi)
Remark  (Figures 6A-6C) spg-7 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.10 Y47G6A.10 2349   I: 3467134-3467253

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001372 protein DNA interaction variant Variations in the selective and non-covalent physical association between a protein and a specific DNA sequence, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00046902

0 Strain