WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y47G6A.10 Sequence Name  Y47G6A.10
Length (nt)  2349   Chromosome Location  I: 3467134-3467253
Chromosome . Primary Identifier  I Chromosome Location . Start  3467134
Chromosome Location . End  3467253
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.10

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE34400 SPG-7 87.5 782 Caenorhabditis elegans
 

Other

117 RNAi

WormBase ID
WBRNAi00095791
WBRNAi00066219
WBRNAi00110133
WBRNAi00056797
WBRNAi00093688
WBRNAi00085773
WBRNAi00026738
WBRNAi00026740
WBRNAi00037182
WBRNAi00004651
WBRNAi00001115
WBRNAi00112542
WBRNAi00084591
WBRNAi00084590
WBRNAi00084592
WBRNAi00066304
WBRNAi00093103
WBRNAi00093172
WBRNAi00064959
WBRNAi00090770
WBRNAi00110402
WBRNAi00093167
WBRNAi00093169
WBRNAi00093164
WBRNAi00093183
WBRNAi00093175
WBRNAi00093176
WBRNAi00071096
WBRNAi00116691
WBRNAi00117225

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y47G6A.10 3467134 3467253 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y47G6A.10 3467134 3467253 1
CDS:Y47G6A.10 3467303 3467465 1
CDS:Y47G6A.10 3467508 3467580 1
CDS:Y47G6A.10 3469286 3469484 1
CDS:Y47G6A.10 3469542 3469666 1
CDS:Y47G6A.10 3470582 3471727 1
CDS:Y47G6A.10 3472444 3472552 1
CDS:Y47G6A.10 3476518 3476637 1
CDS:Y47G6A.10 3477656 3477949 1

1 Sequence

Length
2349

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47G6A.10.1 Y47G6A.10.1 2919   I: 3467132-3478517