WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00079865 Genotype  unc-54(r293) smg-1(cc546ts)
Phenotype Remark  smg-8(RNAi) is partially defective for nonsense-mediated mRNA decay as detected by its inability to suppress unc-54(r293) mobility defects. Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010551 smg-8 K04B12.3 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04B12.3a K04B12.3a 2622   II: 14441440-14441520
CDS:K04B12.3c K04B12.3c 1068   II: 14444909-14445400
CDS:K04B12.3b K04B12.3b 2616   II: 14441440-14441520

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001538 mRNA surveillance defective Defects in the cellular machinery that targets aberrant mRNAs species (nonsense codons, splice errors, altered untranslated regions etc.) for degradation. In C. elegans, mutations in such loci often act as allele-specific non gene-specific recessive suppressors of certain allele phenotypes and cause abnormal morphogenesis of male and hermaphrodite genitalia.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00033152

0 Strain