WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00108378 Phenotype Remark  Acute RNAi treatment of adults trigger muscle protein degradation. Degradation appears to be both proteosomal and autophagic as blocked by treatment with proteasome inhibitor or in unc-51 mutant background.
Remark  (Figure 6) dnj-27 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001045 dnj-27 Y47H9C.5 Caenorhabditis elegans
WBGene00219231 mir-5545 Y47H9C.21 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47H9C.5b Y47H9C.5b 957   I: 11885032-11885561
CDS:Y47H9C.5a Y47H9C.5a 2367   I: 11877806-11877964

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001645 protein degradation variant Variations in the chemical reactions and pathways resulting in the directed breakdown of a protein (via the destruction of its native, active configuration) compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00042360

0 Strain