WormMine: Gene WBGene00219231

• WormBase Gene ID: WBGene00219231
• Gene Name: mir-5545
• Sequence Name: Y47H9C.21
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by alg-5 based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: I :12.8985±
• Length (nt): 110

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219231

Genomics

2 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y47H9C.21a	Y47H9C.21a	24	I: 11885615-11885638
Transcript:Y47H9C.21b	Y47H9C.21b	23	I: 11885660-11885682

Other

0 CDSs

6 RNAi Result

• WBRNAi00106342
• WBRNAi00037210
• WBRNAi00108398
• WBRNAi00108379
• WBRNAi00108375
• WBRNAi00108378

8 Allele

• gk962706
• gk963849
• gk962859
• gk964175
• gk963906
• gk963788
• WBVar01713554
• WBVar01285820

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219231
• Start: 11885596
• End: 11885705
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(ram2)_downregulated_miRNA
	MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(tm1163)_downregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219231
• Start: 11885596
• End: 11885705
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 110

1 Sequence Ontology Term