WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00095808 Remark  (Table S1) Y65B4A.6 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

12 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004093 ppw-1 C18E3.7 Caenorhabditis elegans
WBGene00015975 cas-2 C18E3.6 Caenorhabditis elegans
WBGene00018007 F33D11.10 F33D11.10 Caenorhabditis elegans
WBGene00018921 sago-2 F56A6.1 Caenorhabditis elegans
WBGene00018923 eme-1 F56A6.4 Caenorhabditis elegans
WBGene00022026 Y65B4A.2 Y65B4A.2 Caenorhabditis elegans
WBGene00022027 vps-20 Y65B4A.3 Caenorhabditis elegans
WBGene00022029 eif-4A3 Y65B4A.6 Caenorhabditis elegans
WBGene00022030 Y65B4A.7 Y65B4A.7 Caenorhabditis elegans
WBGene00022028 Y65B4A.4 Y65B4A.4 Caenorhabditis elegans
WBGene00220188 Y65B4A.10 Y65B4A.10 Caenorhabditis elegans
WBGene00220189 Y65B4A.11 Y65B4A.11 Caenorhabditis elegans

20 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A6.4b F56A6.4b 537   I: 614723-615001
CDS:F56A6.4d F56A6.4d 957   I: 614723-615001
CDS:F56A6.4c F56A6.4c 1182   I: 614723-615001
CDS:F56A6.1a F56A6.1a 2664   I: 618207-618357
CDS:F56A6.1b F56A6.1b 2571   I: 618207-618357
CDS:Y65B4A.6b Y65B4A.6b 840   I: 631094-631285
CDS:Y65B4A.2b Y65B4A.2b 1308   I: 638209-638248
CDS:Y65B4A.2c Y65B4A.2c 1347   I: 642918-642996
CDS:Y65B4A.2a Y65B4A.2a 1266   I: 645453-645567
CDS:Y65B4A.7a Y65B4A.7a 471   I: 645639-645736
CDS:Y65B4A.7b Y65B4A.7b 288   I: 645639-645736
CDS:C18E3.7b C18E3.7b 165   I: 4186562-4186681
CDS:C18E3.7c C18E3.7c 2664   I: 4186562-4186712
CDS:C18E3.6a C18E3.6a 1374   I: 4190158-4190242
CDS:C18E3.7d C18E3.7d 2094   I: 4187331-4187365
CDS:F33D11.10 F33D11.10 1200   I: 5866763-5866954
CDS:F56A6.4a F56A6.4a 1365   I: 614723-615001
CDS:Y65B4A.3 Y65B4A.3 627   I: 636936-637010
CDS:Y65B4A.4 Y65B4A.4 375   I: 621708-621792
CDS:Y65B4A.6a Y65B4A.6a 1200   I: 631094-631285

1 Laboratories

Primary Identifier
GR

2 Phenotype

Identifier Name Description
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000402 avoids bacterial lawn Lawn avoidance refers to behavior in which animals initially enter the bacterial lawn but later exit and remain near the edge of the bacteria. Lawn avoidance is often a response to bacterial food, that is pathogenic or low quality to the animal.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040984

0 Strain