WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00067180 Genotype  bar-1(ga80)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002992 lin-3 F36H1.4 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F36H1.4b F36H1.4b 1311   IV: 11057814-11057868
CDS:F36H1.4d F36H1.4d 1389   IV: 11057814-11057868
CDS:F36H1.4f F36H1.4f 1434   IV: 11057814-11057868
CDS:F36H1.4e F36H1.4e 1299   IV: 11059299-11059341
CDS:F36H1.4a F36H1.4a 1317   IV: 11057814-11057868
CDS:F36H1.4c F36H1.4c 1272   IV: 11057814-11057868
CDS:F36H1.4g F36H1.4g 1395   IV: 11057814-11057868
CDS:F36H1.4h F36H1.4h 1266   IV: 11057814-11057868

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain