WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00068172 Genotype  egl-15(n1477)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans

14 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1k C09D8.1k 6213   II: 10975539-10975674
CDS:C09D8.1l C09D8.1l 6285   II: 10975539-10975674
CDS:C09D8.1f C09D8.1f 6615   II: 10975539-10975674
CDS:C09D8.1j C09D8.1j 6747   II: 10975569-10975836
CDS:C09D8.1e C09D8.1e 5958   II: 10983070-10983217
CDS:C09D8.1g C09D8.1g 3744   II: 11006257-11006617
CDS:C09D8.1h C09D8.1h 3252   II: 11007061-11007192
CDS:C09D8.1a C09D8.1a 6543   II: 10975539-10975674
CDS:C09D8.1b C09D8.1b 4404   II: 10993597-10993702
CDS:C09D8.1c C09D8.1c 3651   II: 11002983-11003250
CDS:C09D8.1d C09D8.1d 6030   II: 10983070-10983217
CDS:C09D8.1i C09D8.1i 6675   II: 10975569-10975836
CDS:C09D8.1m C09D8.1m 5700   II: 10983070-10983217
CDS:C09D8.1n C09D8.1n 5628   II: 10983070-10983217

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain