WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064660 Remark  Genetic enhancer interactions are identified by comparing RNAi phenotypes of library genes in wild-type animals with those seen in mutant worms carrying a defined lesion in a single query gene; a genetic interaction between a query gene and a library gene is observed if the phenotype of the combined perturbation is greater than the sum of the two individual perturbations.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003397 mom-5 T23D8.1 Caenorhabditis elegans
WBGene00007633 C16D2.1 C16D2.1 Caenorhabditis elegans
WBGene00012005 jun-1 T24H10.7 Caenorhabditis elegans

11 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T23D8.1b T23D8.1b 1713   I: 9965641-9966113
CDS:T24H10.7a T24H10.7a 960   II: 9113291-9113402
CDS:T24H10.7b T24H10.7b 900   II: 9116676-9116727
CDS:T24H10.7f T24H10.7f 804   II: 9118553-9118580
CDS:T24H10.7g T24H10.7g 528   II: 9122313-9122492
CDS:T24H10.7d T24H10.7d 468   II: 9127413-9127627
CDS:T24H10.7e T24H10.7e 495   II: 9129412-9129653
CDS:T23D8.1a T23D8.1a 1707   I: 9965641-9966113
CDS:T24H10.7c T24H10.7c 306   II: 9130837-9130889
CDS:T24H10.7h T24H10.7h 762   II: 9120190-9120296
CDS:T24H10.7i T24H10.7i 651   II: 9120806-9120918

1 Laboratories

Primary Identifier
ANF

4 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027756

1 Strain

WormBase ID
WBStrain00028995