WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00044908 Remark 
Secondary Identifier 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003044 lir-1 F18A1.3 Caenorhabditis elegans

14 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18A1.3d F18A1.3d 903   II: 7672043-7672108
CDS:F18A1.3f F18A1.3f 711   II: 7681165-7681326
CDS:F18A1.3j F18A1.3j 714   II: 7681165-7681326
CDS:F18A1.3e F18A1.3e 750   II: 7681165-7681326
CDS:F18A1.3n F18A1.3n 456   II: 7681609-7681895
CDS:F18A1.3a F18A1.3a 891   II: 7672043-7672108
CDS:F18A1.3b F18A1.3b 930   II: 7672043-7672108
CDS:F18A1.3c F18A1.3c 756   II: 7672043-7672108
CDS:F18A1.3g F18A1.3g 426   II: 7681609-7681895
CDS:F18A1.3h F18A1.3h 465   II: 7681609-7681895
CDS:F18A1.3i F18A1.3i 894   II: 7672043-7672108
CDS:F18A1.3k F18A1.3k 429   II: 7681609-7681895
CDS:F18A1.3l F18A1.3l 921   II: 7672043-7672108
CDS:F18A1.3m F18A1.3m 741   II: 7681165-7681326

1 Laboratories

Primary Identifier
TH

1 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

3 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025054

0 Strain