WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00075674 Genotype  him-5
Phenotype Remark  approximately one third of embryos died

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004980 spk-1 B0464.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0464.5d B0464.5d 1860   III: 9459213-9459215
CDS:B0464.5a B0464.5a 3012   III: 9457984-9459023
CDS:B0464.5b B0464.5b 2097   III: 9456642-9456716
CDS:B0464.5c B0464.5c 2325   III: 9456642-9456716

0 Laboratories

4 Phenotype

Identifier Name Description
WBPhenotype:0000684 fewer germ cells Germ cell populations are reduced compared to control animals.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0001355 gonad morphology variant Variations in the form or composition of a specialized tissue of the reproductive tract that produces the male or female gametes compared to control (Wormatlas).
WBPhenotype:0000843 male mating efficiency reduced The number of cross progeny sired by males is reduced compared to control.

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000648 male mating variant Any variation in the specific actions or reactions of the male that are associated with reproduction compared to control.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004476

0 Strain