WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00078303 Phenotype Remark  Small and scrawny in appearance at both 20C and 25C.
Remark  Exact sequence used for RNAi varied. Authors used multiple constructs for the same gene and got the same effect to varying degrees. Spliced coding region sequence of gene used for curation (Y53C10A.12).

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002004 hsf-1 Y53C10A.12 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53C10A.12 Y53C10A.12 2016   I: 11953797-11953889

0 Laboratories

6 Phenotype

Identifier Name Description
WBPhenotype:0000691 gonad development variant Variations in the progression of the organ that produces gametes over time, from its formation to the mature structure compared to control.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0001019 mid larval arrest Animals arrest during the stage between early and late larval development. In C. elegans, mid larval arrest occurs during the L2 to L3 stages of development.
WBPhenotype:0000007 bag of worms A worm carcass is formed with retained eggs that hatch inside.
WBPhenotype:0000314 scrawny Animals are slight or meager in body size compared to control animals at the same developmental stage.
WBPhenotype:0001384 fertility reduced Animals exhibit a reduction in the production of new individuals that contain some portion of their genetic material inherited from that organism as a result of defective gametes.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00006111

0 Strain