WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00071742 Genotype  integrated translational fusion transgene rme-2::GFP
Phenotype Remark  RNAi treatment resulted in endoplasmic-reticulum-like accumulation of RME-2-GFP (low penetrance). Remark  Secondary screen. Candidate secretion regulator based on RME-2-GFP localization (this experiment) and/or yolk uptake by oocytes (primary screen).

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006876 vab-10 ZK1151.1 Caenorhabditis elegans

12 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1151.1c ZK1151.1c 14832   I: 11747762-11747801
CDS:ZK1151.1m ZK1151.1m 14841   I: 11747762-11747801
CDS:ZK1151.1f ZK1151.1f 9933   I: 11764837-11770713
CDS:ZK1151.1e ZK1151.1e 9936   I: 11764837-11770713
CDS:ZK1151.1b ZK1151.1b 10716   I: 11764837-11770713
CDS:ZK1151.1a ZK1151.1a 11085   I: 11764837-11770713
CDS:ZK1151.1i ZK1151.1i 4494   I: 11773361-11773513
CDS:ZK1151.1d ZK1151.1d 10182   I: 11764837-11770713
CDS:ZK1151.1h ZK1151.1h 10275   I: 11764837-11770713
CDS:ZK1151.1j ZK1151.1j 14799   I: 11747762-11747801
CDS:ZK1151.1k ZK1151.1k 14460   I: 11747762-11747801
CDS:ZK1151.1l ZK1151.1l 15180   I: 11747762-11747801

1 Laboratories

Primary Identifier
RT

1 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00030951

0 Strain