WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00007708 Phenotype Remark  % penetrance
Remark  PCR product used to make dsRNA was amplified from genomic DNA. Secondary Identifier  PF:GL1_2G5

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003787 npp-1 K07F5.13 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K07F5.13c K07F5.13c 1920   IV: 9858492-9858589
CDS:K07F5.13a K07F5.13a 1839   IV: 9859372-9859867
CDS:K07F5.13b K07F5.13b 1650   IV: 9858492-9858589

1 Laboratories

Primary Identifier
KK

12 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0001106 spindle orientation variant AB or P1 early emb The orientation of the spindle is aberrant in either the AB or the P1 cell.
WBPhenotype:0001105 P0 spindle position abnormal Altered P0 spindle placement causes either a symmetric first division, a division in which P1 is larger than AB, or a division in which the asymmetry is exaggerated such that AB is much larger than normal.
WBPhenotype:0001121 exaggerated asynchrony early emb Asynchrony of the second division is exaggerated and P1 divides more slowly than normal.
WBPhenotype:0001082 large cytoplasmic granules early emb Abnormally large granules are observed in the cytoplasm of P0.
WBPhenotype:0001143 multiple nuclei early emb Embryos contain more than one nucleus per cell in the inviable one- to four-cell embryo.
WBPhenotype:0001123 synchronous second division early emb AB and P1 divide synchronously.
WBPhenotype:0001141 nucleus reforms cell division remnant early emb After division of either one-cell or two-cell embryos, the nuclei reappear next to the cell division remnant.
WBPhenotype:0001125 P2 EMS synchronous division early emb P2 and EMS divide synchronously.
WBPhenotype:0001127 EMS anterior extension fails early emb The EMS blastomere fails to extend anteriorly and make extensive contact (hug) with the ABa blastomere.
WBPhenotype:0001113 P1 aster defective early emb Early embryos exhibit defects in the array of microtubules emanating from a spindle pole that do not connect to kinetochores in the P1 cell.
WBPhenotype:0001108 P0 spindle rotation failure early emb P0 spindle fails to rotate and extends perpendicular to the long axis of the embryo.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005599

1 Strain

WormBase ID
WBStrain00000001