WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00069884 Phenotype Remark  Loss of gonadal arms (20 percent 0 arms and 31 percent 1 arm). Authors note that this is a typical Sys (for symmetric sister) phenotype which is associated with both SGP daughter cells adopt proximal cell fates.
Remark  exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000445 ceh-22 F29F11.5 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29F11.5a F29F11.5a 1041   V: 10672634-10672845
CDS:F29F11.5b F29F11.5b 648   V: 10674504-10674595
CDS:F29F11.5c F29F11.5c 852   V: 10673871-10673979
CDS:F29F11.5d F29F11.5d 1140   V: 10672634-10672845
CDS:F29F11.5e F29F11.5e 783   V: 10674311-10674440

1 Laboratories

Primary Identifier
JK

2 Phenotype

Identifier Name Description
WBPhenotype:0000399 somatic gonad development variant Any variation in the progression of the components of the gonad that are separate from the germline proper over time from its formation to its mature structure compared to control (Wormatlas).
WBPhenotype:0000188 gonad arm morphology variant Any variation in the 'arm-like' form, structure or composition of the specialized tissue of the reproductive tract that produces gametes compared to control. In C. elegans the reproductive tract in the hermaphrodite has two equivalent gonad 'arms', while the male has a one-armed gonad.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027082

0 Strain