WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097557 Genotype  rrf-3(pk1426); opIs117[Phsp::sel-1sp::GFP::AnxV] (opIs117 is a marker for phospholipid bilayer outer leaflet phosphatidylserine (PS) exposure, an indicator of apoptosis)
Phenotype Remark  tat-1 RNAi results in an increase in the number of embryonic apoptotic cell corpses, as determined by Nomarski/DIC optics. Remark  (Figure 4C) tat-1 RNAi. Curator cannot reconcile author statement as to sequence used; curating with first 800 bp of clone yk34c11
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.11a Y49E10.11a 3420   III: 12399363-12399460
CDS:Y49E10.11b Y49E10.11b 3270   III: 12404132-12404204
CDS:Y49E10.11c Y49E10.11c 3579   III: 12401682-12402063

1 Laboratories

Primary Identifier
WS

2 Phenotype

Identifier Name Description
WBPhenotype:0000243 engulfment failure by killer cell Removal of cell corpses through a dedicated engulfment pathway is defective.
WBPhenotype:0000241 accumulated cell corpses Animals exhibit an increase in the quantity of cells that have undergone programmed cell death but have not been engulfed.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00030738

0 Strain