WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y49E10.11a Sequence Name  Y49E10.11a
Length (nt)  3420   Chromosome Location  III: 12399363-12399460
Chromosome . Primary Identifier  III Chromosome Location . Start  12399363
Chromosome Location . End  12399460
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.11a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28133 TAT-1, isoform a 128.4 1139 Caenorhabditis elegans
 

Other

21 RNAi

WormBase ID
WBRNAi00097558
WBRNAi00057005
WBRNAi00078010
WBRNAi00006804
WBRNAi00097530
WBRNAi00097531
WBRNAi00037286
WBRNAi00097554
WBRNAi00097557
WBRNAi00077999
WBRNAi00078000
WBRNAi00097549
WBRNAi00097548
WBRNAi00097551
WBRNAi00097550
WBRNAi00097553
WBRNAi00097552
WBRNAi00077712
WBRNAi00077718
WBRNAi00077721
WBRNAi00099120

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y49E10.11a 12399363 12399460 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans

17 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y49E10.11a 12399363 12399460 -1
CDS:Y49E10.11a 12400046 12400170 -1
CDS:Y49E10.11a 12404785 12404877 -1
CDS:Y49E10.11a 12405722 12405978 -1
CDS:Y49E10.11a 12407302 12407442 -1
CDS:Y49E10.11a 12407652 12407785 -1
CDS:Y49E10.11a 12407928 12408082 -1
CDS:Y49E10.11a 12409690 12410219 -1
CDS:Y49E10.11a 12412124 12412662 -1
CDS:Y49E10.11a 12413753 12414053 -1
CDS:Y49E10.11a 12414860 12414972 -1
CDS:Y49E10.11a 12415563 12415802 -1
CDS:Y49E10.11a 12417470 12417776 -1
CDS:Y49E10.11a 12418846 12419031 -1
CDS:Y49E10.11a 12420074 12420173 -1
CDS:Y49E10.11a 12420224 12420281 -1
CDS:Y49E10.11a 12420622 12420664 -1

1 Sequence

Length
3420

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49E10.11a.1 Y49E10.11a.1 4185   III: 12398901-12421718
Transcript:Y49E10.11a.2 Y49E10.11a.2 3936   III: 12398914-12420731