WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00062776 Genotype  vav-1(ak41);Pmyo-2::VAV-1
Phenotype Remark  Partial suppression of the defecation-cycle-rhythm defect of vav-1(ak41);Pmyo-2::VAV-1.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002979 lfe-2 C46H11.4 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.4c C46H11.4c 1386   I: 5027211-5027234
CDS:C46H11.4e C46H11.4e 1425   I: 5027707-5027769
CDS:C46H11.4a C46H11.4a 1485   I: 5037391-5037909
CDS:C46H11.4b C46H11.4b 1185   I: 5035937-5036035
CDS:C46H11.4f C46H11.4f 1278   I: 5029190-5029230

1 Laboratories

Primary Identifier
VM

1 Phenotype

Identifier Name Description
WBPhenotype:0000207 defecation cycle variant Any variation in the stereotyped sequence of muscle contractions that result in defecation over a fixed time period compared to control .

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00026850

0 Strain