WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065973 Genotype  sop-2(bx91); bxIs13(egl-5::gfp)
Phenotype Remark  Ectopic expression of egl-5::gfp in the head region was observed earlier, at the pretzel stage in sop-2(bx91; sor-1(RNAi) embryos. this early onset of expression is not seen without sop-2(bx91) in the background. In addition to occurring earlier, there are even more cells that ectopically express egl-5::gfp in sop-2(bx91); sor-1(RNAi) animals then with either sop-2(bx91) or sor-1(RNAi)alone, synergistic repression of egl-5 expression. Authors state no synergistic interactions are observed between sop-2(bx91) and mes-2/mes-6(RNAi). Remark  Authors state most strains used in this work carry the him-5(e1490) mutation. F1 progenies generated 4 hours after injection were scored

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023405 sor-1 ZK1236.3 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1236.3a ZK1236.3a 2442   III: 8418168-8418173
CDS:ZK1236.3b ZK1236.3b 2433   III: 8419208-8419365

1 Laboratories

Primary Identifier
HZ

1 Phenotype

Identifier Name Description
WBPhenotype:0000306 transgene expression variant Any variation in the characteristic expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027128

0 Strain