WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00078000 Genotype  VIT-2::GFP; rrf-1(pk1417)
Phenotype Remark  Strongly reduced the accumulation of VIT-2::GFP fusion protein in oocytes and eggs (required autonomously in germline). Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation (Y49E10.11b ).
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.11a Y49E10.11a 3420   III: 12399363-12399460
CDS:Y49E10.11b Y49E10.11b 3270   III: 12404132-12404204
CDS:Y49E10.11c Y49E10.11c 3579   III: 12401682-12402063

1 Laboratories

Primary Identifier
VB

1 Phenotype

Identifier Name Description
WBPhenotype:0001422 endocytic transport defect Animals exhibit defects in the directed movement of substances into, out of or mediated by the endosome, a membrane-bound organelle that trafficks material to different compartments of the cell or back to the plasma membrane for recycling.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00032283

0 Strain