WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065160 Genotype  pha-4(zu225)
Phenotype Remark  RNAi causes an increased percentage of L1 larvae lacking any detectable pharynx. Remark  pha-4(zu225) is a temperature sensitive allele and 20 C is a moderately restrictive temperature
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

4 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007027 ssl-1 Y111B2A.22 Caenorhabditis elegans
WBGene00013740 hut-1 Y111B2A.20 Caenorhabditis elegans
WBGene00220229 Y111B2A.35 Y111B2A.35 Caenorhabditis elegans
WBGene00220230 Y111B2A.36 Y111B2A.36 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.20b Y111B2A.20b 141   III: 12713527-12713667
CDS:Y111B2A.22a Y111B2A.22a 7188   III: 12714588-12714868
CDS:Y111B2A.20a Y111B2A.20a 1023   III: 12711560-12711693
CDS:Y111B2A.22b Y111B2A.22b 5649   III: 12714588-12714868
CDS:Y111B2A.22d Y111B2A.22d 6750   III: 12715723-12715899

1 Laboratories

Primary Identifier
SM

1 Phenotype

Identifier Name Description
WBPhenotype:0001646 no pharynx Embryos fail to generate cells that exhibit pharyngeal specification.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028549

0 Strain