WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00094440 Genotype  [sec-23::LacZ-GFP(PTCx)]
Phenotype Remark  RNAi resulted in increased expression of the PTCx transgene carrying a premature termination codon, indicative of defective mRNA surveillance machinery Remark  (Text, data not shown) rpl-2 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

4 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004413 rpl-8 B0250.1 Caenorhabditis elegans
WBGene00007126 dhcr-7 B0250.9 Caenorhabditis elegans
WBGene00007124 B0250.7 B0250.7 Caenorhabditis elegans
WBGene00219782 B0250.19 B0250.19 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0250.1 B0250.1 783   V: 20479695-20479974

1 Laboratories

Primary Identifier
HZ

2 Phenotype

Identifier Name Description
WBPhenotype:0001236 transgene expression increased Any increase in the intensity of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001538 mRNA surveillance defective Defects in the cellular machinery that targets aberrant mRNAs species (nonsense codons, splice errors, altered untranslated regions etc.) for degradation. In C. elegans, mutations in such loci often act as allele-specific non gene-specific recessive suppressors of certain allele phenotypes and cause abnormal morphogenesis of male and hermaphrodite genitalia.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040559

0 Strain