WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00101336 Genotype  Q82-YFP
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Q82-YFP animals contain 82 glutamine (Q) repeats fused to YFP to access protein aggregation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000090 age-1 B0334.8 Caenorhabditis elegans
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans

13 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13H8.1h R13H8.1h 1626   I: 10750498-10750509
CDS:R13H8.1i R13H8.1i 1548   I: 10750632-10750655
CDS:R13H8.1f R13H8.1f 1554   I: 10750632-10750655
CDS:R13H8.1b R13H8.1b 1527   I: 10763103-10763347
CDS:R13H8.1m R13H8.1m 1218   I: 10763654-10763706
CDS:R13H8.1a R13H8.1a 1593   I: 10771508-10772149
CDS:R13H8.1e R13H8.1e 912   I: 10772999-10773121
CDS:B0334.8a B0334.8a 3549   II: 11519708-11519839
CDS:B0334.8b B0334.8b 231   II: 11519708-11519839
CDS:R13H8.1c R13H8.1c 1533   I: 10763103-10763347
CDS:R13H8.1d R13H8.1d 1464   I: 10750960-10750984
CDS:R13H8.1k R13H8.1k 1458   I: 10750960-10750984
CDS:R13H8.1l R13H8.1l 1224   I: 10763654-10763706

1 Laboratories

Primary Identifier
AM

0 Phenotype

2 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0001405 protein aggregation variant Variations that result in the accumulation of soluble/insoluble protein aggregates in a particular cell or tissue, compared to control. Protein aggregates are often formed by interactions between misfolded protein molecules and/or deficiencies in proper protein folding.
WBPhenotype:0001935 protein aggregation induced paralysis Animals become paralyzed in response to aggregation of proteins like poly-glutamine or beta-amyloid.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005424

0 Strain