Genomics
1 Transcripts
WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
---|---|---|---|
Transcript:PPA11519.1 | PPA11519.1 | [unknown] |
Other
1 Expression Clusters
Regulated By Treatment | Description | Algorithm | Primary Identifier |
---|---|---|---|
Germline ablation | Genes that showed differential expression in the comparision of germline-ablated animals fed on E. coli OP50 versus un-ablated animals fed E. coli OP50. | Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. | WBPaper00041466:PP_germline-ablation_regulated |
1 Expression Patterns
Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
---|---|---|---|---|
Expr12782 | Ppa-lin-17 /Fz expression was found in the posterior body region surrounding the rectal area in all larval stages. Coexpression of Ppa-lin-17 /Fz::RFP with Ppa-egl-20 /Wnt::GFP indicates that the two genes have an overlapping expression pattern during larval development that is, however, not completely identical. Low level Ppa-lin-17 /Fz::RFP expression is also seen in more anterior regions including the VPCs during the J3 larval stage. All described expression patterns were highly reproducible and were observed in several independent transgenic lines. |
6 GO Annotation
Annotation Extension | Qualifier |
---|---|
involved_in | |
involved_in | |
located_in | |
enables | |
enables | |
enables |