WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222031 Gene Name  Bma-unc-44
Sequence Name  ? Bm1770 Organism  Brugia malayi
Automated Description  Predicted to be involved in signal transduction. Is an ortholog of C. elegans unc-44. In C. elegans, unc-44 is involved in several processes, including axon guidance; establishment or maintenance of cytoskeleton polarity; and regulation of cellular component organization. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

14 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm1770a.1 Bm1770a.1   [unknown]
Transcript:Bm1770b.1 Bm1770b.1   [unknown]
Transcript:Bm1770j.1 Bm1770j.1   [unknown]
Transcript:Bm1770k.1 Bm1770k.1   [unknown]
Transcript:Bm1770e.1 Bm1770e.1   [unknown]
Transcript:Bm1770f.1 Bm1770f.1   [unknown]
Transcript:Bm1770c.1 Bm1770c.1   [unknown]
Transcript:Bm1770d.1 Bm1770d.1   [unknown]
Transcript:Bm1770r.1 Bm1770r.1   [unknown]
Transcript:Bm1770p.1 Bm1770p.1   [unknown]
Transcript:Bm1770q.1 Bm1770q.1   [unknown]
Transcript:Bm1770n.1 Bm1770n.1   [unknown]
Transcript:Bm1770o.1 Bm1770o.1   [unknown]
Transcript:Bm1770m.1 Bm1770m.1   [unknown]
 

Other

14 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm1770c Bm1770c   [unknown]
CDS:Bm1770b Bm1770b   [unknown]
CDS:Bm1770e Bm1770e   [unknown]
CDS:Bm1770d Bm1770d   [unknown]
CDS:Bm1770f Bm1770f   [unknown]
CDS:Bm1770a Bm1770a   [unknown]
CDS:Bm1770r Bm1770r   [unknown]
CDS:Bm1770k Bm1770k   [unknown]
CDS:Bm1770j Bm1770j   [unknown]
CDS:Bm1770m Bm1770m   [unknown]
CDS:Bm1770o Bm1770o   [unknown]
CDS:Bm1770n Bm1770n   [unknown]
CDS:Bm1770q Bm1770q   [unknown]
CDS:Bm1770p Bm1770p   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly lower expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Downregulated
  Transcripts that showed significantly lower expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Downregulated
  Transcripts that showed significantly decreased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M30_vs_L4
  Proteins that showed significantly increased expression in parasites exposed to 20-hydroxyecdysone. An empirical filter of proteins with more than two peptides identified, a P value <0.05 and a greater than two-fold change of differential expression, was applied to the data. The Bonferroni correction was applied to correct the P value for the proteins analyzed. WBPaper00049261:20-hydroxyecdysone_upregulated_protein

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region