WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00302984 Gene Name  Y51H7C.41
Sequence Name  ? Y51H7C.41 Organism  Caenorhabditis elegans
Automated Description  Predicted to be located in membrane. Is an ortholog of human SMIM7 (small integral membrane protein 7). Biotype  SO:0001217
Genetic Position  II:± Length (nt)  ? 611
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00302984

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y51H7C.41.1 Y51H7C.41.1 565   II: 1403321-1403931
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51H7C.41 Y51H7C.41 234   II: 1403325-1403392

5 RNAi Result

WormBase ID
WBRNAi00009372
WBRNAi00026799
WBRNAi00085614
WBRNAi00057214
WBRNAi00064302

18 Allele

Public Name
gk964317
gk963801
gk133685
gk133683
gk133684
WBVar01716120
gk706923
gk595926
gk737035
gk806347
gk725311
gk804090
gk731373
gk318109
gk692259
gk396355
WBVar02040149
WBVar01294715

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00302984 1403321 1403931 1

4 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  
C. elegans genomic annotations (GFF3 Gene)  
Panther orthologue and paralogue predictions  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in hda-2(ok1479) comparing to in N2 animals. DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. WBPaper00062159:hda-2(ok1479)_downregulated
  Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_downregulated

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  located_in

5 Homologues

Type
least diverged orthologue
least diverged orthologue
orthologue
least diverged orthologue
least diverged orthologue

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00302984 1403321 1403931 1

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

1 Sequence

Length
611

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_1403216..1403320   105 II: 1403216-1403320 Caenorhabditis elegans