Genomics
1 Transcripts
WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
---|---|---|---|
Transcript:F46H5.11.1 | F46H5.11.1 |
1331
![]() |
X: 7269520-7272068 |
Other
1 CDSs
WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
---|---|---|---|
CDS:F46H5.11 | F46H5.11 |
1098
![]() |
X: 7269667-7269907 |
54 Allele
Public Name |
---|
gk964260 |
gk963778 |
gk963873 |
gk963874 |
gk964088 |
gk964087 |
gk964003 |
gk964004 |
WBVar02064707 |
gk411437 |
ttTi12992 |
gk677772 |
gk769374 |
gk865694 |
gk675540 |
gk560901 |
gk403704 |
gk559437 |
gk694403 |
gk812365 |
gk935826 |
gk668638 |
gk905159 |
gk422735 |
gk332338 |
gk627236 |
gk508740 |
gk449193 |
gk594759 |
gk508741 |
1 Chromosome Location
Feature . Primary Identifier |
Start | End | Strand |
---|---|---|---|
WBGene00303398 | 7269520 | 7272068 | -1 |
3 Data Sets
Name | URL |
---|---|
WormBaseAcedbConverter | |
GO Annotation data set | |
C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
---|---|---|---|---|---|
intergenic_region_chrX_7269480..7269519 | 40 | X: 7269480-7269519 | Caenorhabditis elegans |
8 Expression Clusters
Regulated By Treatment | Description | Algorithm | Primary Identifier |
---|---|---|---|
Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. | DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. | WBPaper00060811:L1_vs_adult_upregulated_neural | |
Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066594:ilc-17.1(syb5296)_upregulated | |
Heat shock: 34C 30min. | Transcripts that showed significantly increased expression in L2 larva stage C. elegans animals after incubated in a 34C water bath for 30min. | DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. | WBPaper00058955:heatshock_upregulated_CE |
Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
Transcripts that showed significantly decreased expression in tmc-1(rg1003) comparing to in N2. | DESeq2. The genes with a fold change >= 2 and a false discovery rate (FDR) < 0.05 in a comparison were identified as significant DEGs. | WBPaper00065746:tmc-1(rg1003)_downregulated | |
Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_9 | |
Genes that are up or down regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster. | Genes that are regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster. | WBPaper00024393:strongly_regulated_dauer_genes | |
Single-cell RNA-Seq cell group 66_0 expressed in neuron. | scVI 0.6.0 | WBPaper00065841:66_0 |
1 Upstream Intergenic Region
WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
---|---|---|---|---|---|
intergenic_region_chrX_7272069..7272316 | 248 | X: 7272069-7272316 | Caenorhabditis elegans |