WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.5.1 Sequence Name  Y48G1C.5.1
Length (nt)  3575   Chromosome Location  I: 55293-64066
Chromosome . Primary Identifier  I Chromosome Location . Start  55293
Chromosome Location . End  64066 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021678 Y48G1C.5 Y48G1C.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.5 Y48G1C.5 3486   I: 55337-55450

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.5.1 55293 64066 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97   158   I: 55293-55450 Caenorhabditis elegans
Exon99   158   I: 55890-56047 Caenorhabditis elegans
Exon100   170   I: 56124-56293 Caenorhabditis elegans
Exon101   151   I: 56537-56687 Caenorhabditis elegans
Exon102   182   I: 56872-57053 Caenorhabditis elegans
Exon103   369   I: 57257-57625 Caenorhabditis elegans
Exon105   1192   I: 59045-60236 Caenorhabditis elegans
Exon106   816   I: 61236-62051 Caenorhabditis elegans
Exon107   201   I: 62774-62974 Caenorhabditis elegans
Exon108   60   I: 63797-63856 Caenorhabditis elegans
Exon109   69   I: 63904-63972 Caenorhabditis elegans
Exon110   49   I: 64018-64066 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.5.1 55293 64066 -1

1 Sequence

Length
3575

1 Sequence Ontology Term

Identifier Name Description
transcript