WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.2b.1 Sequence Name  Y48G1C.2b.1
Length (nt)  1875   Chromosome Location  I: 71425-80344
Chromosome . Primary Identifier  I Chromosome Location . Start  71425
Chromosome Location . End  80344 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000812 csk-1 Y48G1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.2b Y48G1C.2b 1875   I: 71425-71511

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2b.1 71425 80344 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111   87   I: 71425-71511 Caenorhabditis elegans
Exon113   86   I: 71847-71932 Caenorhabditis elegans
Exon117   80   I: 72511-72590 Caenorhabditis elegans
Exon122   251   I: 72647-72897 Caenorhabditis elegans
Exon126   77   I: 72941-73017 Caenorhabditis elegans
Exon130   162   I: 73605-73766 Caenorhabditis elegans
Exon134   184   I: 74625-74808 Caenorhabditis elegans
Exon138   320   I: 75171-75490 Caenorhabditis elegans
Exon142   162   I: 75951-76112 Caenorhabditis elegans
Exon146   205   I: 76949-77153 Caenorhabditis elegans
Exon150   87   I: 77713-77799 Caenorhabditis elegans
Exon154   135   I: 79313-79447 Caenorhabditis elegans
Exon156   39   I: 80306-80344 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2b.1 71425 80344 1

1 Sequence

Length
1875

1 Sequence Ontology Term

Identifier Name Description
transcript