WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.2a.2 Sequence Name  Y48G1C.2a.2
Length (nt)  2602   Chromosome Location  I: 71845-81156
Chromosome . Primary Identifier  I Chromosome Location . Start  71845
Chromosome Location . End  81156 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000812 csk-1 Y48G1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.2a Y48G1C.2a 1620   I: 72649-72897

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.2 71845 81156 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112   88   I: 71845-71932 Caenorhabditis elegans
Exon115   80   I: 72511-72590 Caenorhabditis elegans
Exon120   251   I: 72647-72897 Caenorhabditis elegans
Exon124   77   I: 72941-73017 Caenorhabditis elegans
Exon128   162   I: 73605-73766 Caenorhabditis elegans
Exon132   184   I: 74625-74808 Caenorhabditis elegans
Exon136   320   I: 75171-75490 Caenorhabditis elegans
Exon140   162   I: 75951-76112 Caenorhabditis elegans
Exon144   205   I: 76949-77153 Caenorhabditis elegans
Exon148   87   I: 77713-77799 Caenorhabditis elegans
Exon152   135   I: 79313-79447 Caenorhabditis elegans
Exon160   851   I: 80306-81156 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.2 71845 81156 1

1 Sequence

Length
2602

1 Sequence Ontology Term

Identifier Name Description
transcript