WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.2a.3 Sequence Name  Y48G1C.2a.3
Length (nt)  2240   Chromosome Location  I: 71862-81063
Chromosome . Primary Identifier  I Chromosome Location . Start  71862
Chromosome Location . End  81063 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.2a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000812 csk-1 Y48G1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.2a Y48G1C.2a 1620   I: 72649-72897

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.3 71862 81063 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114   71   I: 71862-71932 Caenorhabditis elegans
Exon116   80   I: 72511-72590 Caenorhabditis elegans
Exon121   251   I: 72647-72897 Caenorhabditis elegans
Exon125   77   I: 72941-73017 Caenorhabditis elegans
Exon129   162   I: 73605-73766 Caenorhabditis elegans
Exon133   184   I: 74625-74808 Caenorhabditis elegans
Exon137   320   I: 75171-75490 Caenorhabditis elegans
Exon141   162   I: 75951-76112 Caenorhabditis elegans
Exon145   205   I: 76949-77153 Caenorhabditis elegans
Exon149   87   I: 77713-77799 Caenorhabditis elegans
Exon153   135   I: 79313-79447 Caenorhabditis elegans
Exon158   256   I: 80306-80561 Caenorhabditis elegans
Exon161   250   I: 80814-81063 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.3 71862 81063 1

1 Sequence

Length
2240

1 Sequence Ontology Term

Identifier Name Description
transcript