WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.2a.1 Sequence Name  Y48G1C.2a.1
Length (nt)  2419   Chromosome Location  I: 72511-81061
Chromosome . Primary Identifier  I Chromosome Location . Start  72511
Chromosome Location . End  81061 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000812 csk-1 Y48G1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.2a Y48G1C.2a 1620   I: 72649-72897

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.1 72511 81061 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon118   80   I: 72511-72590 Caenorhabditis elegans
Exon119   251   I: 72647-72897 Caenorhabditis elegans
Exon123   77   I: 72941-73017 Caenorhabditis elegans
Exon127   162   I: 73605-73766 Caenorhabditis elegans
Exon131   184   I: 74625-74808 Caenorhabditis elegans
Exon135   320   I: 75171-75490 Caenorhabditis elegans
Exon139   162   I: 75951-76112 Caenorhabditis elegans
Exon143   205   I: 76949-77153 Caenorhabditis elegans
Exon147   87   I: 77713-77799 Caenorhabditis elegans
Exon151   135   I: 79313-79447 Caenorhabditis elegans
Exon159   756   I: 80306-81061 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.2a.1 72511 81061 1

1 Sequence

Length
2419

1 Sequence Ontology Term

Identifier Name Description
transcript