WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1C.10a.1 Sequence Name  Y48G1C.10a.1
Length (nt)  3142   Chromosome Location  I: 81193-91296
Chromosome . Primary Identifier  I Chromosome Location . Start  81193
Chromosome Location . End  91296 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1C.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021683 mtm-10 Y48G1C.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1C.10a Y48G1C.10a 2412   I: 81234-81272

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.10a.1 81193 91296 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162   80   I: 81193-81272 Caenorhabditis elegans
Exon164   79   I: 81885-81963 Caenorhabditis elegans
Exon166   122   I: 82016-82137 Caenorhabditis elegans
Exon168   91   I: 82586-82676 Caenorhabditis elegans
Exon170   240   I: 83181-83420 Caenorhabditis elegans
Exon173   124   I: 84190-84313 Caenorhabditis elegans
Exon175   180   I: 84388-84567 Caenorhabditis elegans
Exon177   125   I: 84614-84738 Caenorhabditis elegans
Exon179   150   I: 84836-84985 Caenorhabditis elegans
Exon183   81   I: 86824-86904 Caenorhabditis elegans
Exon186   190   I: 87034-87223 Caenorhabditis elegans
Exon189   215   I: 87520-87734 Caenorhabditis elegans
Exon192   233   I: 88268-88500 Caenorhabditis elegans
Exon195   141   I: 88566-88706 Caenorhabditis elegans
Exon198   213   I: 89372-89584 Caenorhabditis elegans
Exon204   878   I: 90419-91296 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1C.10a.1 81193 91296 1

1 Sequence

Length
3142

1 Sequence Ontology Term

Identifier Name Description
transcript