WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56C11.2b.1 Sequence Name  F56C11.2b.1
Length (nt)  2010   Chromosome Location  I: 160404-164957
Chromosome . Primary Identifier  I Chromosome Location . Start  160404
Chromosome Location . End  164957 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56C11.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004225 ptr-11 F56C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56C11.2b F56C11.2b 2010   I: 160404-160546

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2b.1 160404 164957 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon393   143   I: 160404-160546 Caenorhabditis elegans
Exon396   288   I: 160712-160999 Caenorhabditis elegans
Exon399   293   I: 161597-161889 Caenorhabditis elegans
Exon402   230   I: 162368-162597 Caenorhabditis elegans
Exon405   73   I: 162645-162717 Caenorhabditis elegans
Exon408   332   I: 163099-163430 Caenorhabditis elegans
Exon411   109   I: 163500-163608 Caenorhabditis elegans
Exon414   395   I: 163809-164203 Caenorhabditis elegans
Exon417   89   I: 164677-164765 Caenorhabditis elegans
Exon418   58   I: 164900-164957 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2b.1 160404 164957 -1

1 Sequence

Length
2010

1 Sequence Ontology Term

Identifier Name Description
transcript