WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y48G1A.6a Sequence Name  Y48G1A.6a
Length (nt)  1695   Chromosome Location  I: 343541-343649
Chromosome . Primary Identifier  I Chromosome Location . Start  343541
Chromosome Location . End  343649
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1A.6a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41949 MBTR-1, isoform a 65.7 564 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00000458
WBRNAi00007423
WBRNAi00056938
WBRNAi00004676
WBRNAi00004677
WBRNAi00004678
WBRNAi00037264
WBRNAi00116622
WBRNAi00062440

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y48G1A.6a 343541 343649 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021661 mbtr-1 Y48G1A.6 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y48G1A.6a 343541 343649 -1
CDS:Y48G1A.6a 343894 344033 -1
CDS:Y48G1A.6a 345021 345830 -1
CDS:Y48G1A.6a 346375 346516 -1
CDS:Y48G1A.6a 346561 346742 -1
CDS:Y48G1A.6a 346793 347044 -1
CDS:Y48G1A.6a 348305 348364 -1

1 Sequence

Length
1695

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y48G1A.6a.1 Y48G1A.6a.1 2227   I: 343069-348424