WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y50C1A.1b Sequence Name  Y50C1A.1b
Length (nt)  1500   Chromosome Location  I: 402295-402417
Chromosome . Primary Identifier  I Chromosome Location . Start  402295
Chromosome Location . End  402417
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50C1A.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE49387 OTUB-2, isoform b 56.3 499 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00094705
WBRNAi00057064
WBRNAi00004692
WBRNAi00037319
WBRNAi00113704
WBRNAi00117917
WBRNAi00113708
WBRNAi00116428

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y50C1A.1b 402295 402417 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021733 otub-2 Y50C1A.1 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y50C1A.1b 402295 402417 1
CDS:Y50C1A.1b 403514 403717 1
CDS:Y50C1A.1b 406063 406231 1
CDS:Y50C1A.1b 407370 407544 1
CDS:Y50C1A.1b 408521 408763 1
CDS:Y50C1A.1b 410344 410626 1
CDS:Y50C1A.1b 411203 411435 1
CDS:Y50C1A.1b 412441 412510 1

1 Sequence

Length
1500

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y50C1A.1b.1 Y50C1A.1b.1 1901   I: 402291-412907