WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y18H1A.3a.1 Sequence Name  Y18H1A.3a.1
Length (nt)  4301   Chromosome Location  I: 700278-715874
Chromosome . Primary Identifier  I Chromosome Location . Start  700278
Chromosome Location . End  715874 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y18H1A.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021209 hgap-1 Y18H1A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y18H1A.3a Y18H1A.3a 3567   I: 700634-700786

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y18H1A.3a.1 700278 715874 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon1378   509   I: 700278-700786 Caenorhabditis elegans
Exon1383   108   I: 701756-701863 Caenorhabditis elegans
Exon1389   1737   I: 702249-703985 Caenorhabditis elegans
Exon1393   132   I: 704419-704550 Caenorhabditis elegans
Exon1398   246   I: 706419-706664 Caenorhabditis elegans
Exon1401   325   I: 707946-708270 Caenorhabditis elegans
Exon1405   227   I: 710039-710265 Caenorhabditis elegans
Exon1407   265   I: 711731-711995 Caenorhabditis elegans
Exon1409   433   I: 713216-713648 Caenorhabditis elegans
Exon1411   169   I: 715474-715642 Caenorhabditis elegans
Exon1413   150   I: 715725-715874 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y18H1A.3a.1 700278 715874 -1

1 Sequence

Length
4301

1 Sequence Ontology Term

Identifier Name Description
transcript