WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54A5.1.1 Sequence Name  F54A5.1.1
Length (nt)  1673   Chromosome Location  I: 989671-992178
Chromosome . Primary Identifier  I Chromosome Location . Start  989671
Chromosome Location . End  992178 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018786 hmbx-1 F54A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54A5.1 F54A5.1 1275   I: 989683-990142

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54A5.1.1 989671 992178 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

3 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon1960   472   I: 989671-990142 Caenorhabditis elegans
Exon1961   518   I: 990521-991038 Caenorhabditis elegans
Exon1962   683   I: 991496-992178 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54A5.1.1 989671 992178 1

1 Sequence

Length
1673

1 Sequence Ontology Term

Identifier Name Description
transcript